FY, You are over analyzing everything and it's going to drive you insane. Accept her for who she is right now. She's still baking and won't be done for quite a while. There is no rhyme or reason for what she says or does because she's operating on pure emotions.
At least she's not in the anger stage like she was. She's suffering from some depression because she's just not feeling that "in love" feeling w/you right now. You have to remember that they don't have those feelings for us while in crisis. Those feelings are stuffed down and numbness replaces them for a long time. She may not regain that warm and fuzzy feeling for you until she begins to hit acceptance...which is a long time from now.
Sit quietly and the answers will come. Dig deeper for more patience and keep the focus on you.
Sit quietly, the answers will reveal themselves when you least expect them to. The past is gone, the present is a gift and you need to focus on today, allow the future to reveal itself when it is ready.